STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPPC8Trafficking protein particle complex subunit 8. (1470 aa)    
Predicted Functional Partners:
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.998
TRAPPC6B
Trafficking protein particle complex subunit 6B.
   
 0.998
TRAPPC1
Trafficking protein particle complex 1.
    
 0.998
TRAPPC2
Trafficking protein particle complex subunit 2.
    
 0.998
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.995
TRAPPC11
Trafficking protein particle complex subunit 11.
   
 0.994
TRAPPC2L
Trafficking protein particle complex subunit 2-like protein.
    
 0.992
TRAPPC12
Trafficking protein particle complex subunit 12.
    
 0.982
RAB1A
Ras-related protein Rab-1A.
    
 0.977
TRAPPC3L
Trafficking protein particle complex subunit 3-like protein.
    
 0.968
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.