STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX8Transcription factor SOX-8. (468 aa)    
Predicted Functional Partners:
WT1
Wilms tumor B.
    
 0.605
CTNNB1
Catenin beta-1.
    
 0.570
CD44
CD44 antigen.
      
 0.521
RUNX3
Runt-related transcription factor 3.
   
 0.511
RUNX1
Runt-related transcription factor 1.
   
 0.511
ENSLSDP00000008165
annotation not available
   
 0.511
RUNX2
Runt-related transcription factor 2.
   
 0.511
OLIG3
Oligodendrocyte transcription factor 3.
   
 0.501
OLIG2
Oligodendrocyte transcription factor 2.
   
 0.501
DMRT1
Doublesex-and mab-3-related transcription factor 1.
    
 0.487
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.