STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCLRE1ADNA cross-link repair 1A protein. (964 aa)    
Predicted Functional Partners:
XRCC5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.809
XRCC6
X-ray repair cross-complementing protein 5.
   
 0.805
FANCM
Fanconi anemia group M protein.
   
 0.802
LOC110477051
Fanconi anemia group M protein.
   
 0.802
SYMPK
Symplekin.
   
 0.801
INTS4
Integrator complex subunit 4.
   
 0.783
FANCD2
Fanconi anemia group D2 protein.
   
 0.777
ENSLSDP00000003873
annotation not available
   
 0.774
CPSF1_1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.774
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
 0.764
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.