STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNF8Vacuolar-sorting protein SNF8. (394 aa)    
Predicted Functional Partners:
VPS25
Vacuolar protein-sorting-associated protein 25.
   
 0.999
VPS36
Vacuolar protein-sorting-associated protein 36.
   
 0.999
CHMP6
Charged multivesicular body protein 6.
    
 0.983
C17orf75
Protein Njmu-R1.
    
 0.955
VPS28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.945
CHMP4B
Charged multivesicular body protein 4b.
    
 0.933
TSG101
Tumor susceptibility gene 101 protein.
    
 0.930
CHMP2A
Charged multivesicular body protein 2a.
   
 0.911
CHMP4C
Charged multivesicular body protein 4c.
    
 0.900
LOC110473306
Charged multivesicular body protein 3.
    
 0.891
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.