STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g22496Skp1_POZ domain-containing protein. (83 aa)    
Predicted Functional Partners:
PC110_g16765
RING-type domain-containing protein.
   
 0.864
PC110_g20472
F-box domain-containing protein.
    
 0.848
PC110_g10210
WD_REPEATS_REGION domain-containing protein.
    
 0.827
PC110_g729
Uncharacterized protein.
    
 0.827
PC110_g19137
Ubiquitin-like domain-containing protein.
    
  0.817
PC110_g6722
Uncharacterized protein.
    
 0.810
PC110_g9041
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
    
 0.797
PC110_g16607
60S ribosomal protein.
   
 0.767
PC110_g6567
Lipase_3 domain-containing protein.
    
 0.763
PC110_g2827
Cullin-3; Belongs to the cullin family.
    
 0.763
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.