STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g21665Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (567 aa)    
Predicted Functional Partners:
PC110_g20501
Uncharacterized protein.
     
 0.926
PC110_g18167
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.916
PC110_g467
Leucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.916
PC110_g1384
Cystathionine gamma-lyase.
   
 
 0.915
PC110_g20468
tRNA-binding domain-containing protein.
    
 0.911
PC110_g7871
tRNA-binding domain-containing protein.
 
  
 0.911
PC110_g12846
Methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 
0.910
PC110_g11033
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.907
PC110_g1243
Cystathionine beta-lyase.
   
 
 0.846
PC110_g18889
DALR_1 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.839
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.