STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g21488Integrase catalytic domain-containing protein. (604 aa)    
Predicted Functional Partners:
PC110_g9402
Fanconi anemia group M protein.
    
  0.767
PC110_g18759
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
 
     0.660
PC110_g23274
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.641
PC110_g22464
Integrase catalytic domain-containing protein.
  
     0.504
PC110_g22875
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.492
PC110_g15959
Integrase catalytic domain-containing protein.
  
     0.490
PC110_g18351
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.482
PC110_g15304
Uncharacterized protein.
 
     0.479
PC110_g12784
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.464
PC110_g18760
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.463
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.