STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g20856Uncharacterized protein. (67 aa)    
Predicted Functional Partners:
PC110_g19137
Ubiquitin-like domain-containing protein.
    
 0.665
PC110_g6843
Ubiquitin-like domain-containing protein.
    
  0.536
PC110_g3597
Ubiquitin-like domain-containing protein.
    
  0.536
PC110_g17313
TPR_REGION domain-containing protein.
    
  0.513
PC110_g7545
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.453
PC110_g786
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2.
     
 0.436
PC110_g3131
MINDY_DUB domain-containing protein.
    
  0.433
PC110_g1060
Methylmalonic aciduria type A.
    
  0.433
UBC
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.404
PC110_g11349
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.404
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.