Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PC110_g20810Chromatin structure-remodeling complex subunit. (1301 aa)    
Predicted Functional Partners:
PC110_g5397
Uncharacterized protein.
    
 0.772
PC110_g10737
SWIB domain-containing protein.
    
 0.767
PC110_g10684
ARID domain-containing protein.
    
 0.743
PC110_g17123
PHD-type domain-containing protein.
    
 0.713
PC110_g13087
HMG box domain-containing protein.
    
 0.697
PC110_g5490
HMG box domain-containing protein.
    
 0.697
PC110_g19346
Uncharacterized protein; Belongs to the actin family.
    
 0.692
PC110_g1511
Uncharacterized protein; Belongs to the actin family.
    
 0.692
PC110_g2928
Uncharacterized protein.
    
 0.691
PC110_g2993
Sushi domain-containing protein.
    
 0.655
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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