STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g19684ABC transmembrane type-1 domain-containing protein. (178 aa)    
Predicted Functional Partners:
PC110_g4617
Acetyl-CoA carboxylase.
   
 0.687
PC110_g13535
Uncharacterized protein.
    
 0.585
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.545
PC110_g9223
Uncharacterized protein.
    
 0.534
PC110_g11484
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.524
PC110_g8501
Peptidase_M16 domain-containing protein.
   
  0.518
PC110_g5051
Putative mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.
   
  0.518
PC110_g14130
26S proteasome non-ATPase regulatory subunit 14.
    
  0.505
PC110_g5397
Uncharacterized protein.
    
  0.505
PC110_g5965
26S proteasome non-ATPase regulatory subunit 2.
    
  0.493
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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