STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g19331Uncharacterized protein. (1970 aa)    
Predicted Functional Partners:
PC110_g7781
HORMA domain-containing protein.
   
 0.810
PC110_g15925
Uncharacterized protein.
    
 0.804
PC110_g967
Uncharacterized protein.
    
 0.804
PC110_g4895
TAF domain-containing protein.
    
 0.803
PC110_g5064
TFIID_20kDa domain-containing protein.
    
 0.803
PC110_g1894
Intraflagellar transport protein.
    
 0.799
PC110_g8510
Uncharacterized protein.
   
 0.794
PC110_g7433
Anaphase-promoting complex subunit 6.
    
 0.792
PC110_g1831
Uncharacterized protein.
    
 0.789
PC110_g1536
Uncharacterized protein.
    
 0.786
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.