STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g16492Mediator of RNA polymerase II transcription subunit 36a. (248 aa)    
Predicted Functional Partners:
PC110_g16346
Nucleolar protein 56.
   
 0.999
PC110_g12723
Nucleolar protein 58.
   
 0.999
PC110_g6767
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.999
PC110_g1509
U3 small nucleolar RNA-interacting protein 2.
   
 0.999
PC110_g7927
WD_REPEATS_REGION domain-containing protein.
   
 0.998
PC110_g11557
Nucleolar protein 6.
   
 0.997
PC110_g11936
BP28CT domain-containing protein.
   
 0.997
PC110_g8041
U3 small nucleolar RNA-associated protein 15.
   
 0.997
PC110_g12571
Bystin.
   
 
 0.996
PC110_g9033
WD_REPEATS_REGION domain-containing protein.
   
 0.996
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.