STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g14298Uncharacterized protein. (236 aa)    
Predicted Functional Partners:
PC110_g6003
Uncharacterized protein.
    
 
 0.941
PC110_g5294
Protein YIPF.
    
 
 0.906
PC110_g6565
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.733
PC110_g366
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.733
PC110_g15858
Uncharacterized protein.
    
 
 0.731
PC110_g6302
Ras-like GTP-binding protein.
    
 
 0.731
PC110_g5062
Uncharacterized protein.
    
 
 0.731
PC110_g7877
Protein YIPF.
   
 
 0.642
PC110_g3440
Uncharacterized protein.
   
 
 0.616
PC110_g5476
PRA1 family protein.
    
 
 0.602
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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