STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g13851Uncharacterized protein. (335 aa)    
Predicted Functional Partners:
PC110_g4991
Cellulase domain-containing protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.753
PC110_g3755
Fe2OG dioxygenase domain-containing protein.
    
 0.753
PC110_g4625
Tryptophan biosynthesis protein.
   
 
 0.721
PC110_g18691
Uncharacterized protein.
   
 0.619
PC110_g8745
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
   
 0.619
PC110_g7040
Uncharacterized protein.
   
 0.619
PC110_g3096
EPSP_synthase domain-containing protein.
   
 0.619
PC110_g17122
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
    
 0.592
PC110_g12926
Arylacetonitrilase.
   
 0.587
PC110_g12127
Aldehyde dehydrogenase family 7 member; Belongs to the aldehyde dehydrogenase family.
    
  0.572
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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