STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g13232Uncharacterized protein. (193 aa)    
Predicted Functional Partners:
PC110_g14432
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
 0.838
PC110_g20468
tRNA-binding domain-containing protein.
   
 
 0.615
PC110_g7871
tRNA-binding domain-containing protein.
   
 
 0.615
PC110_g7882
Uncharacterized protein.
   
  
 0.543
PC110_g18401
WD_REPEATS_REGION domain-containing protein.
   
   0.435
PC110_g15439
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.421
PC110_g21665
Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.414
PC110_g12846
Methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.414
PC110_g12640
Isoleucine--tRNA ligase, cytoplasmic.
   
  
 0.400
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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