STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g12248Uncharacterized protein. (186 aa)    
Predicted Functional Partners:
PC110_g14432
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
 0.758
PC110_g3242
Protein kinase domain-containing protein.
    
 0.613
PC110_g738
Uncharacterized protein.
   
  0.555
PC110_g8406
Uncharacterized protein.
    
 0.545
PC110_g1601
Uncharacterized protein.
    
 0.545
PC110_g12494
Ras-related protein.
    
 0.503
PC110_g19137
Ubiquitin-like domain-containing protein.
    
  0.489
PC110_g3136
DPH-type MB domain-containing protein.
    
 
 0.489
PC110_g9926
Uncharacterized protein.
    
  0.464
PC110_g6567
Lipase_3 domain-containing protein.
    
 0.454
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.