STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g9347Long chain acyl-CoA synthetase 7, peroxisomal. (665 aa)    
Predicted Functional Partners:
PC110_g17793
Carnitine O-palmitoyltransferase 1, liver isoform; Belongs to the carnitine/choline acetyltransferase family.
     
 0.910
PC110_g4140
AMP-binding domain-containing protein.
  
  
  0.864
PC110_g15746
Uncharacterized protein.
     
 0.855
PC110_g7772
Uncharacterized protein.
     
 0.855
PC110_g6985
Uncharacterized protein.
     
 0.855
PC110_g19199
Uncharacterized protein.
     
 0.850
PC110_g19200
Uncharacterized protein.
     
 0.847
PC110_g9487
Uncharacterized protein.
  
  
  0.827
PC110_g2272
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.792
PC110_g1655
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.762
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.