STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g6648WD_REPEATS_REGION domain-containing protein. (586 aa)    
Predicted Functional Partners:
PC110_g4464
DNA damage-binding protein 1a.
    
 0.941
PC110_g2420
Cullin-4; Belongs to the cullin family.
    
 0.875
PC110_g16473
Uncharacterized protein.
    
 0.836
PC110_g16765
RING-type domain-containing protein.
    
 0.835
PC110_g10218
Replication protein A subunit.
    
 0.821
PC110_g5734
MPN domain-containing protein.
    
 0.795
PC110_g16960
PCI domain-containing protein.
    
 0.794
PC110_g8118
PCI domain-containing protein.
    
 0.793
PC110_g21603
Uncharacterized protein.
    
 0.783
PC110_g19762
SAS-6_N domain-containing protein.
    
 0.783
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.