STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g1815Uncharacterized protein. (157 aa)    
Predicted Functional Partners:
PC110_g7779
E2F_TDP domain-containing protein.
   
 0.546
PC110_g11347
Histone H3; Belongs to the histone H3 family.
    
 0.503
PC110_g10223
Histone domain-containing protein.
    
 0.503
PC110_g5288
Histone H3; Belongs to the histone H3 family.
    
 0.503
PC110_g1421
Histone domain-containing protein.
    
 0.503
PC110_g16893
RING-type domain-containing protein.
    
  0.466
PC110_g3514
RING-type domain-containing protein.
    
  0.466
PC110_g7884
Uncharacterized protein.
    
 
 0.462
PC110_g5362
RING-type domain-containing protein.
    
 0.458
PC110_g1970
RING-type domain-containing protein.
    
 0.458
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.