STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC110_g1498t-SNARE coiled-coil homology domain-containing protein. (353 aa)    
Predicted Functional Partners:
PC110_g9890
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.993
PC110_g14777
t-SNARE coiled-coil homology domain-containing protein.
   
 0.991
PC110_g12365
Uncharacterized protein.
    
 0.990
PC110_g12683
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.972
PC110_g177
Uncharacterized protein.
    
 0.972
PC110_g8215
Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.971
PC110_g2600
Uso1_p115_head domain-containing protein.
    
 0.968
PC110_g20661
TPR_REGION domain-containing protein.
    
 0.964
PC110_g19131
t-SNARE coiled-coil homology domain-containing protein.
  
  
 
0.903
PC110_g10690
Uncharacterized protein.
   
 0.894
Your Current Organism:
Phytophthora cactorum
NCBI taxonomy Id: 29920
Other names: P. cactorum, Phytophthora sp. 748, Phytophthora sp. 753, Phytophthora sp. 764A, Phytophthora sp. 798, Phytophthora sp. 813, Phytophthora sp. CSL 20316642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.