STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI23827.1Transcriptional regulator, DeoR family. (257 aa)    
Predicted Functional Partners:
SHG96967.1
Acetyltransferase (GNAT) domain-containing protein.
    
   0.880
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
  
 0.801
SHI19240.1
Protein of unknown function.
  
    0.725
SHH95657.1
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase.
  
  
 0.671
SHI15750.1
Glycerol-3-phosphate dehydrogenase.
 
  
 0.607
SHI21021.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
    0.575
SHG82292.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.575
SHG82388.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
    0.575
SHG89772.1
Pteridine reductase.
  
    0.575
SHG95137.1
Citronellol/citronellal dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.575
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.