STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI26225.1Hypothetical protein. (355 aa)    
Predicted Functional Partners:
SHI24968.1
Multi-sensor hybrid histidine kinase.
   
 0.701
SHI26231.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
       0.556
SHH77563.1
PAS domain S-box-containing protein.
   
 0.545
SHG78121.1
PAS domain S-box-containing protein.
   
 0.507
SHH29284.1
PAS domain S-box-containing protein.
   
 0.506
SHI27568.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.469
argD
acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
       0.462
SHI21278.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
    
  0.448
SHI26239.1
Para-aminobenzoate synthetase component 2.
       0.442
SHI26213.1
Arginine N-succinyltransferase.
       0.441
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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