STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG76376.1Uncharacterized iron-regulated protein. (309 aa)    
Predicted Functional Partners:
SHG76162.1
TonB-dependent receptor.
  
  
 0.769
SHG77157.1
TonB dependent receptor.
  
    0.696
SHG84929.1
Iron complex outermembrane recepter protein.
  
    0.696
SHH18389.1
Iron complex outermembrane recepter protein.
  
    0.696
SHH31112.1
Iron complex outermembrane recepter protein.
  
    0.696
SHH95579.1
Outer membrane receptor proteins, mostly Fe transport.
  
    0.696
SHH97374.1
Outer membrane receptor proteins, mostly Fe transport.
  
    0.696
SHI19167.1
Outer membrane receptor proteins, mostly Fe transport.
  
    0.696
SHG80395.1
Outer membrane receptor for ferrienterochelin and colicins.
  
  
 0.651
SHI21169.1
Nitrite reductase (NADH) small subunit.
    
  0.635
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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