STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG93937.1Cyanophycinase; Belongs to the peptidase S51 family. (560 aa)    
Predicted Functional Partners:
SHG93907.1
TonB-dependent Receptor Plug Domain.
 
     0.793
SHI15719.1
Beta-aspartyl-peptidase (threonine type).
 
  
 0.688
SHG93839.1
Beta-aspartyl-dipeptidase (metallo-type); Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.
 
   
 0.655
SHI18730.1
Protein of unknown function.
  
     0.631
SHI04575.1
Arginase family enzyme; Belongs to the arginase family.
  
     0.553
SHG93976.1
Imidazolonepropionase.
  
    0.547
SHG93871.1
Uncharacterized membrane protein YfcC, ion transporter superfamily.
 
     0.536
SHH24202.1
Aspartate 4-decarboxylase.
     
 0.455
SHI18747.1
Alanine-synthesizing transaminase.
     
 0.455
SHH32352.1
Uncharacterized membrane protein YfcC, ion transporter superfamily.
 
     0.437
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.