STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG94525.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
SHG94628.1
Type IV pilus assembly protein PilE.
  
  
 0.970
SHH79562.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.921
SHI05636.1
MSHA biogenesis protein MshP.
  
  
 0.901
SHH79637.1
Type IV pilus assembly protein PilE.
  
  
 0.872
SHG94593.1
Hypothetical protein.
     
 0.839
SHG94494.1
Hypothetical protein.
       0.803
SHG94558.1
Hypothetical protein.
  
    0.788
SHH79618.1
Type IV fimbrial biogenesis protein FimT.
  
  
 0.719
SHG94661.1
Hypothetical protein.
       0.488
SHH98989.1
Type IV pilus assembly protein PilP.
   
  
 0.406
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.