STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG95743.1Rubrerythrin. (139 aa)    
Predicted Functional Partners:
SHG95777.1
Fe-S oxidoreductase.
 
  
 0.943
SHG95812.1
Protein of unknown function.
 
   
 0.938
SHI15428.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
 0.861
SHG95848.1
Hypothetical protein.
       0.704
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.686
SHG83453.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.657
SHI15601.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
  
 0.616
SHH37102.1
Nitrate/nitrite transporter NarK.
    
  0.578
SHI20893.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.570
SHG98218.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.570
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.