STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG98088.1Peptidase family M23. (266 aa)    
Predicted Functional Partners:
SHH49194.1
Flagellar motor switch/type III secretory pathway protein FliN.
    
   0.825
SHI01613.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.790
SHG98059.1
Cystathione beta-lyase.
       0.678
SHG98123.1
Dihydroorotase.
   
   0.669
SHH96540.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.647
SHH99051.1
Penicillin-binding protein 1A.
  
   
 0.482
SHI23301.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.463
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
 
 
 0.439
SHI10458.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
    
   0.431
SHI18946.1
Membrane-bound lytic murein transglycosylase D.
  
 
 0.415
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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