STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH18087.1Hypothetical protein. (244 aa)    
Predicted Functional Partners:
SHH18052.1
FAD/FMN-containing dehydrogenase.
     0.978
SHH18025.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.953
SHH93562.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.854
SHH18153.1
dTDP-glucose 4,6-dehydratase.
   
  0.771
SHH18114.1
Hypothetical protein.
       0.752
SHH18183.1
Hypothetical protein.
       0.655
SHH77651.1
Protein of unknown function.
  
    0.505
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.