STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH20531.1Alginate export. (400 aa)    
Predicted Functional Partners:
SHI10708.1
Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family.
    
 
 0.793
SHG90888.1
TonB-dependent receptor.
  
     0.643
SHH29697.1
Hypothetical protein.
  
   0.622
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.613
SHH20501.1
Nitrate/nitrite transport system ATP-binding protein.
 
     0.607
SHH20468.1
Nitrate/nitrite transport system permease protein.
 
     0.591
SHH74961.1
Hypothetical protein.
  
 
   0.591
SHH20435.1
Nitrate/nitrite transport system substrate-binding protein.
 
     0.589
SHG81147.1
Predicted methyltransferase.
  
     0.561
SHH95579.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.535
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.