STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH21970.1Uncharacterized conserved protein, DUF58 family, contains vWF domain. (310 aa)    
Predicted Functional Partners:
SHH22000.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.970
SHH21936.1
MoxR-like ATPase.
  
 0.924
SHI23603.1
LysM domain-containing protein.
 
     0.773
SHH98989.1
Type IV pilus assembly protein PilP.
 
     0.769
SHH99024.1
Type IV pilus assembly protein PilN.
  
     0.757
SHH99004.1
Type IV pilus assembly protein PilO.
 
     0.733
SHG89115.1
Type IV pilus assembly protein PilZ.
 
     0.726
SHH99038.1
Type IV pilus assembly protein PilM.
  
     0.694
SHH98974.1
Type IV pilus assembly protein PilQ.
 
     0.671
SHH21908.1
SPFH domain / Band 7 family protein.
       0.651
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.