STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH23972.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
SHH24000.1
Hypothetical protein.
 
     0.709
SHG88481.1
Hypothetical protein.
  
     0.636
SHH77923.1
Hypothetical protein.
  
     0.615
SHI02604.1
Transcriptional regulator, TetR family.
  
 
   0.590
SHH21617.1
Hypothetical protein.
  
     0.572
SHG79460.1
Protein of unknown function.
  
     0.565
SHH29023.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.556
SHH35162.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.535
SHH24590.1
Uncharacterized conserved protein, DUF1330 family.
  
     0.457
SHG87435.1
Hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
  
     0.451
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.