STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH29577.1Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. (471 aa)    
Predicted Functional Partners:
SHI26556.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.987
SHH29372.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
 0.987
SHH29520.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.985
SHI26570.1
Polysaccharide export outer membrane protein.
 
 0.983
SHH29550.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.952
SHH75682.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
 0.946
SHH29084.1
Probable O-glycosylation ligase, exosortase A-associated.
 
  
 0.845
SHH29023.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.836
SHH28972.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.785
SHH29169.1
Hypothetical protein.
 
 
 0.746
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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