STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH51043.1Conjugation TrbI-like protein. (1184 aa)    
Predicted Functional Partners:
SHI23173.1
Putative adhesin.
    
   0.999
SHH50609.1
Defect in organelle trafficking protein DotC.
   
 
 0.999
SHH51065.1
Putative outer membrane core complex of type IVb secretion.
   
 
 0.999
SHH50539.1
Intracellular multiplication protein IcmB.
  
 
 0.971
SHI18946.1
Membrane-bound lytic murein transglycosylase D.
   
 
 0.949
SHH96540.1
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.943
SHH79870.1
OmpA family protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.905
SHG98157.1
OmpA family protein.
   
   0.884
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
   0.884
SHH20030.1
OmpA family protein.
   
   0.884
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.