STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH74873.1Iron complex outermembrane recepter protein. (918 aa)    
Predicted Functional Partners:
SHH74758.1
Tryptophan halogenase.
 
     0.790
SHI16285.1
Tryptophan halogenase.
 
     0.783
SHI16276.1
Cupin-like domain-containing protein.
 
     0.778
SHI16270.1
SapC protein.
  
     0.768
SHI16260.1
Tryptophan halogenase.
 
     0.760
SHI09779.1
Tryptophan halogenase.
 
     0.757
SHI09732.1
Tryptophan halogenase.
  
     0.755
SHH74637.1
Maltose/moltooligosaccharide transporter.
  
     0.739
SHI09787.1
SapC protein.
  
     0.716
SHH74825.1
Glycosidase.
 
     0.709
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.