STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH75948.1Predicted arabinose efflux permease, MFS family. (393 aa)    
Predicted Functional Partners:
SHH78209.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.738
SHI27535.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase.
  
 
 0.671
SHI27494.1
Chorismate mutase.
  
 
  0.499
SHG80335.1
Putative acetyltransferase.
 
     0.454
SHH75927.1
Hypothetical protein.
       0.451
SHI24968.1
Multi-sensor hybrid histidine kinase.
    
 0.450
SHH75973.1
Hypothetical protein.
       0.413
SHG79105.1
Sugar phosphate permease.
  
  
 0.408
SHI19254.1
Multidrug resistance efflux pump.
  
 
 0.405
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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