STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH77651.1Protein of unknown function. (178 aa)    
Predicted Functional Partners:
SHH77711.1
Hypothetical protein.
 
  
 0.985
SHH77748.1
Short-chain dehydrogenase.
 
    0.969
SHH77729.1
Hypothetical protein.
 
   
 0.959
SHH77675.1
Chalcone isomerase-like.
 
     0.952
SHH77690.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.940
SHH77807.1
anti-ECFsigma factor, ChrR.
 
   
 0.830
SHI18885.1
Ketosteroid isomerase-related protein.
 
     0.801
SHI21407.1
Na+/melibiose symporter.
 
  
 0.728
SHH77789.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.718
SHH77767.1
Hypothetical protein.
 
     0.661
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.