STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH93875.1Opacity-associated protein A LysM-like domain-containing protein. (442 aa)    
Predicted Functional Partners:
SHH49194.1
Flagellar motor switch/type III secretory pathway protein FliN.
    
   0.825
SHI01613.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.801
SHH96540.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.782
SHI27617.1
Lipoprotein NlpD.
  
   
 0.776
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
    0.771
SHI23301.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.722
SHH24872.1
Protein of unknown function.
  
  
 0.708
SHH99051.1
Penicillin-binding protein 1A.
  
   
 0.696
SHI18946.1
Membrane-bound lytic murein transglycosylase D.
 
 
 0.679
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.604
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
Server load: low (28%) [HD]