STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH96037.1Putative Ig domain-containing protein. (1295 aa)    
Predicted Functional Partners:
SHH96052.1
PA domain-containing protein; Belongs to the peptidase S8 family.
     0.789
SHH59571.1
Hypothetical protein.
   
 0.763
SHH62329.1
Regulator of chromosome condensation (RCC1) repeat-containing protein.
   
 0.763
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.565
SHI02889.1
Cytochrome oxidase assembly protein ShyY1.
    
   0.565
SHI19514.1
Protein of unknown function.
  
 
  0.488
SHH79337.1
Transcriptional regulator, TetR family.
  
     0.486
SHI05649.1
Hypothetical protein.
  
 
  0.479
SHH93526.1
Hypothetical protein.
  
 
  0.478
SHI14191.1
Hypothetical protein.
  
 
  0.477
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.