STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI04972.1Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor. (524 aa)    
Predicted Functional Partners:
SHI24968.1
Multi-sensor hybrid histidine kinase.
 0.999
SHH77563.1
PAS domain S-box-containing protein.
 0.999
SHI03616.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.999
SHI09250.1
Two-component system, chemotaxis family, response regulator CheV.
 
 0.999
SHG96903.1
Na+/proline symporter.
  
 0.997
SHI01498.1
Fused signal recognition particle receptor; Partial gene; manually curated.
  
 0.997
SHI10303.1
Purine-binding chemotaxis protein CheW.
 
 0.996
SHI10349.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.996
SHH29284.1
PAS domain S-box-containing protein.
 
 0.995
SHI27568.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 0.994
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.