STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI08953.1Oxygen tolerance. (552 aa)    
Predicted Functional Partners:
SHI08901.1
Protein of unknown function DUF58.
 
  
 0.974
SHI08943.1
Ca-activated chloride channel family protein.
 
 
 0.973
SHI08930.1
Ca-activated chloride channel family protein.
 
   
 0.957
SHI08916.1
Protein of unknown function.
 
   
 0.945
SHH73464.1
Ca-activated chloride channel family protein.
 
 
 0.884
SHH73535.1
Protein of unknown function DUF58.
 
  
 0.880
SHI08891.1
MoxR-like ATPase.
 
  
 0.867
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.839
SHH73488.1
Ca-activated chloride channel family protein.
 
   
 0.816
SHI08980.1
Protein of unknown function.
 
    0.718
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.