STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI19597.1Nitroreductase / dihydropteridine reductase. (218 aa)    
Predicted Functional Partners:
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.851
SHI21547.1
2-succinylbenzoyl-CoA synthetase.
   
   0.740
SHG81203.1
Long-chain acyl-CoA synthetase.
   
   0.740
SHG81261.1
Long-chain acyl-CoA synthetase.
   
   0.740
SHI15010.1
Long-chain acyl-CoA synthetase.
   
   0.740
SHG82593.1
Purple acid Phosphatase, N-terminal domain.
    
  0.720
SHG82623.1
Hypothetical protein.
    
  0.720
SHG82562.1
ABC-2 type transport system permease protein.
  
    0.683
SHH79433.1
ABC-2 type transport system permease protein.
  
    0.683
SHI05782.1
ABC-2 type transport system permease protein.
  
    0.683
Your Current Organism:
Ferrimonas marina
NCBI taxonomy Id: 299255
Other names: DSM 16917, F. marina, Ferrimonas marina Katsuta et al. 2005, MBIC 06480, NBRC 102583, strain A4D-4
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