STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX13519.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
APX13518.1
RNA polymerase factor sigma-32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
    0.831
APX13520.1
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.713
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.657
APX13516.1
Histidine phosphatase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
APX13517.1
Bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
       0.638
APX13131.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
APX13515.1
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.528
APX13521.1
Molybdopterin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
APX13522.1
Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.462
APX13514.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.420
Your Current Organism:
Tateyamaria omphalii
NCBI taxonomy Id: 299262
Other names: IAM 15108, JCM 21569, KCTC 12333, T. omphalii, Tateyamaria omphalii Kurahashi and Yokota 2008 emend. Sass et al. 2010, strain MKT107
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