LOC114789803 protein (Denticeps clupeoides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114789803

Cell cycle and apoptosis regulator protein 2-like. (795 aa)

Predicted Functional Partners:

pdss1

0.809

pdss2

0.809

LOC114799728

0.797

LOC114799723

0.797

LOC114792621

0.749

LOC114800109

0.749

hpdl

0.749

sirt6

0.749

LOC114788129

0.693

LOC114769353

0.693

Your Current Organism:

Denticeps clupeoides

NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114769353	LOC114789803	ENSDCDP00000049151	ENSDCDP00000001170	NAD-dependent protein deacylase sirtuin-5, mitochondrial-like.	Cell cycle and apoptosis regulator protein 2-like.	0.693
LOC114769353	sirt6	ENSDCDP00000049151	ENSDCDP00000034261	NAD-dependent protein deacylase sirtuin-5, mitochondrial-like.	Sirtuin 6.	0.914
LOC114788129	LOC114789803	ENSDCDP00000031579	ENSDCDP00000001170	NAD-dependent protein deacylase sirtuin-5, mitochondrial-like.	Cell cycle and apoptosis regulator protein 2-like.	0.693
LOC114788129	sirt6	ENSDCDP00000031579	ENSDCDP00000034261	NAD-dependent protein deacylase sirtuin-5, mitochondrial-like.	Sirtuin 6.	0.915
LOC114789803	LOC114769353	ENSDCDP00000001170	ENSDCDP00000049151	Cell cycle and apoptosis regulator protein 2-like.	NAD-dependent protein deacylase sirtuin-5, mitochondrial-like.	0.693
LOC114789803	LOC114788129	ENSDCDP00000001170	ENSDCDP00000031579	Cell cycle and apoptosis regulator protein 2-like.	NAD-dependent protein deacylase sirtuin-5, mitochondrial-like.	0.693
LOC114789803	LOC114792621	ENSDCDP00000001170	ENSDCDP00000011069	Cell cycle and apoptosis regulator protein 2-like.	4-hydroxyphenylpyruvate dioxygenase.	0.749
LOC114789803	LOC114799723	ENSDCDP00000001170	ENSDCDP00000039511	Cell cycle and apoptosis regulator protein 2-like.	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like.	0.797
LOC114789803	LOC114799728	ENSDCDP00000001170	ENSDCDP00000039496	Cell cycle and apoptosis regulator protein 2-like.	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like.	0.797
LOC114789803	LOC114800109	ENSDCDP00000001170	ENSDCDP00000015128	Cell cycle and apoptosis regulator protein 2-like.	4-hydroxyphenylpyruvate dioxygenase-like.	0.749
LOC114789803	hpdl	ENSDCDP00000001170	ENSDCDP00000019694	Cell cycle and apoptosis regulator protein 2-like.	4-hydroxyphenylpyruvate dioxygenase like.	0.749
LOC114789803	pdss1	ENSDCDP00000001170	ENSDCDP00000021165	Cell cycle and apoptosis regulator protein 2-like.	Decaprenyl diphosphate synthase subunit 1.	0.809
LOC114789803	pdss2	ENSDCDP00000001170	ENSDCDP00000045417	Cell cycle and apoptosis regulator protein 2-like.	Decaprenyl diphosphate synthase subunit 2.	0.809
LOC114789803	sirt6	ENSDCDP00000001170	ENSDCDP00000034261	Cell cycle and apoptosis regulator protein 2-like.	Sirtuin 6.	0.749
LOC114792621	LOC114789803	ENSDCDP00000011069	ENSDCDP00000001170	4-hydroxyphenylpyruvate dioxygenase.	Cell cycle and apoptosis regulator protein 2-like.	0.749
LOC114792621	LOC114800109	ENSDCDP00000011069	ENSDCDP00000015128	4-hydroxyphenylpyruvate dioxygenase.	4-hydroxyphenylpyruvate dioxygenase-like.	0.867
LOC114792621	hpdl	ENSDCDP00000011069	ENSDCDP00000019694	4-hydroxyphenylpyruvate dioxygenase.	4-hydroxyphenylpyruvate dioxygenase like.	0.851
LOC114799723	LOC114789803	ENSDCDP00000039511	ENSDCDP00000001170	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like.	Cell cycle and apoptosis regulator protein 2-like.	0.797
LOC114799723	pdss1	ENSDCDP00000039511	ENSDCDP00000021165	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like.	Decaprenyl diphosphate synthase subunit 1.	0.670
LOC114799723	pdss2	ENSDCDP00000039511	ENSDCDP00000045417	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like.	Decaprenyl diphosphate synthase subunit 2.	0.627