STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cop1COP1 E3 ubiquitin ligase. (692 aa)    
Predicted Functional Partners:
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
 0.995
ddb1
Damage specific DNA binding protein 1.
    
 0.994
cul4b
Cullin 4B.
    
 0.959
LOC114764581
cullin-4A-like.
    
 0.959
dda1
DET1 and DDB1 associated 1.
    
  0.958
dcaf10
DDB1 and CUL4 associated factor 10.
    
  0.937
dcaf11
DDB1 and CUL4 associated factor 11.
    
  0.936
LOC114793696
RING-box protein 1.
    
 0.932
LOC114793901
RING-box protein 1.
    
 0.932
DCAF1
DDB1 and CUL4 associated factor 1.
    
  0.931
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.