STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl13bADP ribosylation factor like GTPase 13B. (390 aa)    
Predicted Functional Partners:
pde6d
Phosphodiesterase 6D.
     
 0.892
cog8
Component of oligomeric golgi complex 8.
   
 0.892
ift46
Intraflagellar transport 46.
    
 
 0.871
inpp5e
Inositol polyphosphate-5-phosphatase E.
     
 0.867
ift88
Interleukin 17D.
    
 0.860
ift22
Intraflagellar transport 22.
    
 
 0.847
LOC114801939
Conserved oligomeric Golgi complex subunit 6-like.
    
 0.842
ift81
Intraflagellar transport 81.
    
 
 0.824
ift74
Intraflagellar transport 74.
    
 0.817
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.808
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.