STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114786644Guanine nucleotide exchange protein smcr8a-like. (720 aa)    
Predicted Functional Partners:
wdr41
WD repeat domain 41.
    
 0.987
LOC114789063
Guanine nucleotide exchange C9orf72-like.
    
 0.972
LOC114789671
Guanine nucleotide exchange C9orf72-like.
    
 0.972
rab8a
RAB8A, member RAS oncogene family.
    
 0.898
tbk1
TANK binding kinase 1.
   
 0.892
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.884
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.883
rab39b
RAB39B, member RAS oncogene family.
    
 0.856
atg13
Autophagy related 13.
    
 0.856
LOC114796913
Uncharacterized LOC114796913.
     
 0.850
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.