STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114782223Homeobox protein TGIF1-like. (261 aa)    
Predicted Functional Partners:
smad2
SMAD family member 2.
    
 0.910
LOC114801392
Homeobox protein TGIF2-like.
  
  
 
0.871
SMAD3
Mothers against decapentaplegic homolog 3-like.
    
 0.864
ENSDCDP00000013281
annotation not available
    
 0.864
smad3
SMAD family member 3.
    
 0.864
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
    
 
 0.649
ENSDCDP00000018998
pre-B-cell leukemia homeobox 2.
    
0.646
LOC114793796
pre-B-cell leukemia transcription factor 1-like.
    
0.646
LOC114785808
pre-B-cell leukemia transcription factor 1-like.
    
0.646
LOC114786125
pre-B-cell leukemia transcription factor 3-like.
    
 0.646
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.