STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114787925Cysteine and histidine-rich domain-containing protein 1-like. (384 aa)    
Predicted Functional Partners:
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
   
 0.973
ppp5c
Protein phosphatase 5 catalytic subunit.
   
 0.969
hsp90b1
Heat shock protein 90 beta family member 1.
   
 0.968
LOC114792954
Heat shock protein HSP 90-beta.
   
 0.914
LOC114803107
Heat shock protein HSP 90-alpha.
   
 0.914
LOC114786871
Hamartin-like.
   
 0.910
trap1
TNF receptor associated protein 1.
   
 0.910
LOC114799161
Hamartin-like.
   
 0.910
smpx
Small muscle protein X-linked.
   
  
 0.695
fitm1
Fat storage inducing transmembrane protein 1.
   
  
 0.618
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.