STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114768252POZ-, AT hook-, and zinc finger-containing protein 1-like. (613 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.632
ak9
Adenylate kinase 9.
    
  0.580
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.579
LOC114796668
Thioredoxin domain-containing protein 3 homolog.
    
 0.577
ENSDCDP00000054111
annotation not available
    
  0.568
ENSDCDP00000054113
annotation not available
    
  0.568
YTHDC2
YTH domain containing 2.
    
  0.533
phf21a
PHD finger protein 21A.
  
  0.523
gtf3c3
General transcription factor IIIC subunit 3.
    
 0.521
sgk3
Serum/glucocorticoid regulated kinase family member 3.
    
  0.521
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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