STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3b2Splicing factor 3b subunit 2. (869 aa)    
Predicted Functional Partners:
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.999
prpf8
pre-mRNA processing factor 8.
   
 0.999
prpf3
pre-mRNA processing factor 3.
   
 0.999
bud31
BUD31 homolog.
    
 0.999
sf3b1
Splicing factor 3b subunit 1.
   
 0.999
sf3a1
Splicing factor 3a subunit 1.
   
 0.999
sf3b3
Splicing factor 3b subunit 3.
   
 0.999
xab2
XPA binding protein 2.
   
 0.999
sf3b5
Splicing factor 3b subunit 5.
    
 0.999
sf3a3
Splicing factor 3a subunit 3.
   
 0.999
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.